PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1348
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 199aa    MW: 22401.2 Da    PI: 8.3604
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1348genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY179.61.8e-55715021168
        YABBY  21 ilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114
                  i  vsvP +sl++vvtvrCGhCtsllsvn++kas    +lla+  h de  +e + ee + +++         +s ++s s ++ s+n +e++ rv p
  Gh_A01G1348   7 IKKVSVPCNSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASFAHDDEPKEEAVSEEVGGHRK---------TSDRRSPSLMSSSDNGEEDIVRVNP 95 
                  567***************************9998555556666665333333333333333322.........2222222222237889999999988 PP

        YABBY 115 .virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                   v++PPekrqr+Psaynrfikeei+r+k++nP+i h+eafs+aaknWahfP+ih 
  Gh_A01G1348  96 tVNKPPEKRQRAPSAYNRFIKEEIRRLKTQNPNIPHKEAFSTAAKNWAHFPPIHK 150
                  8*****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-538150IPR006780YABBY protein
SuperFamilySSF470956.15E-996147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.2E-798150IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MASDKEIKKV SVPCNSLSMV VTVRCGHCTS LLSVNMMKAS FVPLHLLASF AHDDEPKEEA  60
VSEEVGGHRK TSDRRSPSLM SSSDNGEEDI VRVNPTVNKP PEKRQRAPSA YNRFIKEEIR  120
RLKTQNPNIP HKEAFSTAAK NWAHFPPIHK HNKGEGVSCE RDEGEASWNV EATEVHIQGN  180
DFRERKAARN SIWTKSPFE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5835598e-49JX583559.1 Gossypium hirsutum clone NBRI_GE16632 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467406.11e-136PREDICTED: axial regulator YABBY 4 isoform X1
SwissprotQ9LDT34e-66YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A061E6863e-88A0A061E686_THECC; Plant-specific transcription factor YABBY family protein
STRINGVIT_01s0127g00330.t013e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-62YABBY family protein